Acknowledgments

{"type":"doc","content":[{"type":"layoutSection","content":[{"type":"layoutColumn","attrs":{"width":33.33},"content":[{"type":"paragraph","content":[{"type":"inlineExtension","attrs":{"extensionType":"com.atlassian.confluence.macro.core","extensionKey":"livesearch","parameters":{"macroParams":{"spaceKey":{"value":"EUDR"},"additional":{"value":"page excerpt"},"placeholder":{"value":"Search this space"}},"macroMetadata":{"macroId":{"value":"9cc6ca63fa08ffc2bc5b5a54786ef6d2"},"schemaVersion":{"value":"1"},"placeholder":[{"type":"icon","data":{"url":"https://inerainc.atlassian.net/wiki/download/resources/confluence.extra.livesearch/images/search.png"}}],"title":"Live Search"}},"localId":"0e1ba78b-4c3a-4fa6-a801-6c1d65b60a8c"}}]}]},{"type":"layoutColumn","attrs":{"width":33.33},"content":[{"type":"paragraph","content":[{"text":"On this page","type":"text","marks":[{"type":"strong"}]}]},{"type":"extension","attrs":{"layout":"default","extensionType":"com.atlassian.confluence.macro.core","extensionKey":"toc","parameters":{"macroParams":{"minLevel":{"value":"1"},"maxLevel":{"value":"7"}},"macroMetadata":{"macroId":{"value":"a61d1489861062f02c5736693fe116f6"},"schemaVersion":{"value":"1"},"title":"Table of Contents"}},"localId":"2c08ebd9-79b1-4024-9962-de43495ec92a"}}]},{"type":"layoutColumn","attrs":{"width":33.33},"content":[{"type":"paragraph","content":[{"text":"In this section","type":"text","marks":[{"type":"strong"}]}]},{"type":"extension","attrs":{"layout":"default","extensionType":"com.atlassian.confluence.macro.core","extensionKey":"children","parameters":{"macroParams":{"page":{"value":"JATS/NLM XML Export"}},"macroMetadata":{"macroId":{"value":"70747a8a7044a9d07bd37df53510dc22"},"schemaVersion":{"value":"2"},"title":"Child pages (Children Display)"}},"localId":"60435100-7288-4482-b90e-9e53057ccf35"}}]}]},{"type":"layoutSection","content":[{"type":"layoutColumn","attrs":{"width":66.66},"content":[{"type":"heading","attrs":{"level":1},"content":[{"text":"Acknowledgements and Author Notes","type":"text"}]},{"type":"paragraph","content":[{"text":"JATS Export supports acknowledgements and also various types of author notes including financial disclosures, conflict of interest statements, and details of author contributions.","type":"text"}]},{"type":"paragraph","content":[{"text":"The following example image illustrates the appropriate use of author note section heads and text:","type":"text"}]},{"type":"mediaSingle","attrs":{"layout":"center","width":100.0},"content":[{"type":"media","attrs":{"width":785,"alt":"Screenshot in Draft View of back matter section. See the next paragraph for further description.","id":"487597cf-a3c8-421d-b3fd-318070b7e98e","collection":"contentId-2326691925","type":"file","height":286}}]},{"type":"paragraph","content":[{"text":"The above image showing properly styled Acknowledgements, Financial Disclosures, Competing Interests, and Author Contributions with preceding heads, yields the following XML:","type":"text"}]},{"type":"codeBlock","content":[{"text":"\n \n ...\n \n \n Author Contributions\n

CG prepared the manuscript. BR generated the various equations shown in the manuscript.

\n \n \n \n ...\n\n...\n\n \n Acknowledgments\n

We would like to thank Bill Kasdorf, Peter Krautzberger, and Paul Topping for their invaluable feedback during the revision process.

\n \n \n \n Financial Disclosure\n

None.

\n \n \n Competing Interests\n

None.

\n \n \n","type":"text"}]}]},{"type":"layoutColumn","attrs":{"width":33.33},"content":[{"type":"panel","attrs":{"panelType":"info"},"content":[{"type":"paragraph","content":[{"text":" For more information on the paragraph styles, see ","type":"text"},{"text":"Acknowledgements, Author Notes, & Sponsor/Funders","type":"text","marks":[{"type":"link","attrs":{"href":"https://inerainc.atlassian.net/wiki/pages/resumedraft.action?draftId=2326823151"}}]},{"text":" in the eXtyles JATS Style Guide.","type":"text"}]}]}]}]},{"type":"layoutSection","content":[{"type":"layoutColumn","attrs":{"width":66.66},"content":[{"type":"heading","attrs":{"level":1},"content":[{"text":"Contract Sponsor and Number","type":"text"}]},{"type":"paragraph","content":[{"text":"In JATS or NLM XML export configurations, eXtyles can be set up to provide two Word character styles that support tagging of funding source and award number information for acknowledgment of grant-funded research support. ","type":"text"}]},{"type":"paragraph","content":[{"text":"In the following image, the character styles “Contract-Sponsor” and “Contract-Number” have been applied to their respective items:","type":"text"}]},{"type":"mediaSingle","attrs":{"layout":"center"},"content":[{"type":"media","attrs":{"width":801,"alt":"Screenshot of the funding statement with color-coded character styles applied to the organizations and the affiliated contract number","id":"c4a78a27-cbf8-468b-9582-c16a60f5d98f","collection":"contentId-2326691925","type":"file","height":76}}]},{"type":"paragraph","content":[{"text":"which results in the following XML in the or element when exporting to ","type":"text"},{"text":"JATS 1.0","type":"text","marks":[{"type":"annotation","attrs":{"annotationType":"inlineComment","id":"8ec67b80-aa2c-45a6-9013-afba02d9e7da"}}]},{"text":" or version 3.0 of the NLM Book or Journal Publishing DTD:","type":"text"}]},{"type":"codeBlock","content":[{"text":"\n\nEuropean Community\nNATT HEALTH-F3-2008-222965\n\n\nUK Medical Research Council\nU1175 32056\n\n","type":"text"}]},{"type":"paragraph","content":[{"text":"and the following XML for the Acknowledgments section:","type":"text"}]},{"type":"codeBlock","content":[{"text":"

This work was funded by the \nEuropean Community \n(NATT HEALTH-F3-2008-222965) \nand the UK Medical Research Council\n(programme number U1175 32056).

","type":"text"}]},{"type":"paragraph","content":[{"text":"According to version ","type":"text"},{"text":"2.3 of the Journal or Book DTD","type":"text","marks":[{"type":"annotation","attrs":{"annotationType":"inlineComment","id":"636d971c-6fc6-4752-91db-ab4c1ef41c22"}}]},{"text":", the following XML is generated in or :","type":"text"}]},{"type":"codeBlock","content":[{"text":"NATT HEALTH-F3-2008-222965\nU1175 32056\nEuropean Community\nUK Medical Research Council","type":"text"}]},{"type":"paragraph","content":[{"text":"and the following XML for the Acknowledgments section:","type":"text"}]},{"type":"codeBlock","content":[{"text":"

This work was funded by the European Community (NATT HEALTH-F3-2008-222965) and the UK Medical Research Council (programme number U1175 32056).

","type":"text"}]},{"type":"paragraph","content":[{"text":"During export, eXtyles links a funding source with any award numbers that it encounters before the next funding source. ","type":"text"}]},{"type":"paragraph","content":[{"text":"This means that if an award number appears before eXtyles has encountered a funding source, it will cause a parsing error. ","type":"text"}]},{"type":"panel","attrs":{"panelType":"warning"},"content":[{"type":"paragraph","content":[{"text":"The number must be placed after the funding source to achieve correct linking.","type":"text"}]}]},{"type":"paragraph","content":[{"text":" eXtyles also supports having multiple award numbers marked for a single funding source.","type":"text"}]}]},{"type":"layoutColumn","attrs":{"width":33.33},"content":[{"type":"paragraph"}]}]},{"type":"layoutSection","content":[{"type":"layoutColumn","attrs":{"width":66.66},"content":[{"type":"heading","attrs":{"level":1},"content":[{"text":"FundRef","type":"text","marks":[{"type":"annotation","attrs":{"annotationType":"inlineComment","id":"3c57f826-010d-4211-b370-b7d8eb8ac998"}}]}]},{"type":"paragraph","content":[{"text":"The eXtyles NLM/JATS export filter also supports FundRef IDs that are placed in funding or acknowledgment paragraphs of the Word file. ","type":"text"}]},{"type":"paragraph","content":[{"text":"While FundRef provides standardization for funding information, FundRef support in XML means you don’t have to include the funder ID in the printed publication; the funder id is hidden under the name of the funding agency.","type":"text"}]},{"type":"paragraph","content":[{"text":"A combination of Word hyperlink and eXtyles character styles are used to properly set up FundRef IDs in the document. ","type":"text"}]},{"type":"paragraph","content":[{"text":"The funder name is converted into a Word hyperlink, where the funder name is the visible text of the link and the FundRef ID is the actual hyperlink. ","type":"text"}]},{"type":"paragraph","content":[{"text":"The orange character style \"Contract Sponsor\" is then applied to the hyperlink. ","type":"text"}]},{"type":"panel","attrs":{"panelType":"note"},"content":[{"type":"paragraph","content":[{"text":"Example:","type":"text","marks":[{"type":"strong"}]}]},{"type":"paragraph","content":[{"text":"The text \"National Institute of Mental Health\" is a hyperlink to the FundRef id \"","type":"text"},{"text":"http://dx.doi.org/10.13039/100000025","type":"text","marks":[{"type":"link","attrs":{"href":"http://dx.doi.org/10.13039/100000025"}}]},{"text":"\" and is styled with the \"Contract Sponsor\" character style and the contract numbers are styled with the character style “Contract Number”:","type":"text"}]}]},{"type":"mediaSingle","attrs":{"layout":"center"},"content":[{"type":"media","attrs":{"width":812,"alt":"Screenshot of the 'Acknowledgements' paragraph with funding information. The institute has a color-coded character style, and the number IDs, which also have color-coded character styling, are in parentheses after the institute name","id":"774a1348-4857-46cf-a674-566e6bb5f42f","collection":"contentId-2326691925","type":"file","height":80}}]},{"type":"paragraph","content":[{"text":"According to version ","type":"text"},{"text":"1.0 of the JATS DTD","type":"text","marks":[{"type":"annotation","attrs":{"annotationType":"inlineComment","id":"313d42de-8c2e-4262-8887-f7b8a44514f6"}}]},{"text":", the following XML is generated in :","type":"text"}]},{"type":"codeBlock","content":[{"text":"\nNational Institute of Mental Health http://dx.doi.org/10.13039/100000025\nMH078111\nMH078143\nMH059490\n\n","type":"text"}]},{"type":"paragraph","content":[{"text":"and the following XML for the Acknowledgments section:","type":"text"}]},{"type":"codeBlock","content":[{"text":"

Acknowledgments: Research funded by National Institute of Mental Healthhttp://dx.doi.org/10.13039/100000025 (MH078111, MH078143, MH059490).

","type":"text"}]}]},{"type":"layoutColumn","attrs":{"width":33.33},"content":[{"type":"panel","attrs":{"panelType":"info"},"content":[{"type":"paragraph","content":[{"text":"FundRef is a CrossRef initiative","type":"text","marks":[{"type":"link","attrs":{"href":"https://www.crossref.org/services/funder-registry/"}}]},{"text":" that provides a standardized way to report funding sources for scholarly publications. ","type":"text"}]},{"type":"paragraph","content":[{"text":"By including standardized funding information in the publication XML, funders, researchers, and publishers can more easily discover how funds are being used.","type":"text"}]}]},{"type":"panel","attrs":{"panelType":"success"},"content":[{"type":"paragraph","content":[{"text":"If your organization is interested in adding FundRef ids to your XML, please ","type":"text"},{"text":"contact eXtyles Support","type":"text","marks":[{"type":"link","attrs":{"href":"mailto:eXtyles-support@inera.com"}}]},{"text":".","type":"text"}]}]}]}]},{"type":"layoutSection","content":[{"type":"layoutColumn","attrs":{"width":66.66},"content":[{"type":"paragraph","content":[{"text":"In version ","type":"text"},{"text":"1.1 of JATS","type":"text","marks":[{"type":"annotation","attrs":{"annotationType":"inlineComment","id":"789ceb1d-0474-4b3c-808c-6c73eccf044b"}}]},{"text":", the XML in is:","type":"text"}]},{"type":"codeBlock","content":[{"text":"\n\n\nNational Institute of Mental Health\n http://dx.doi.org/10.13039/100000025\n\n\nMH078111\nMH078143\nMH059490\n\n","type":"text"}]},{"type":"paragraph","content":[{"text":"and similarly the institution-wrap element is used in the funding-source in the acknowledgment.","type":"text"}]}]},{"type":"layoutColumn","attrs":{"width":33.33},"content":[{"type":"paragraph"}]}]}],"version":1}

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